ACH Universal software is capable of creating split deposits for your QuickBooks users.
To setup a split deposit click on the QuickBooks tab > QuickBooks Integration > Utilities tab > Payroll Split Deposit tab > and click Display List.
Next, click on the employee that is requesting the payroll split deposit and fill out their information in the section below.
Note: All employees will need an employee ID in their QuickBooks profile. In addition, please note that you cannot use percentages--you must specify amounts.